chr9:87912671:C>T Detail (hg19)

Information

Genome

Assembly Position
hg19 chr9:87,912,671-87,912,671
hg38 chr9:85,297,756-85,297,756 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.098
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.002 major depressive disorder To examine whether the polymorphisms of BDNF (rs6265) and NTRK2 (rs1387923, rs27... BeFree 23137999 Detail
0.002 Unipolar Depression To examine whether the polymorphisms of BDNF (rs6265) and NTRK2 (rs1387923, rs27... BeFree 23137999 Detail
0.128 bipolar disorder NA GAD Detail
Annotation

Annotations

DescrptionSourceLinks
To examine whether the polymorphisms of BDNF (rs6265) and NTRK2 (rs1387923, rs2769605 and rs1565445)... DisGeNET Detail
To examine whether the polymorphisms of BDNF (rs6265) and NTRK2 (rs1387923, rs2769605 and rs1565445)... DisGeNET Detail
NA DisGeNET Detail
Gene
-
dbSNP
rs2769605 dbSNP
Genome
hg19
Position
chr9:87,912,671-87,912,671
Variant Type
snv
Reference Allele
C
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs2769605
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.0977
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
1637
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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